Bromodomain

The bromodomain is colored red. It is a four-helix bundle that is opened on one end. It is shown bound to residues 12-19 of Histone 3, in which Lys 14 is acetylated (colored yellow). The acetylated lysine interacts with conserved Asn 140 of the bromodomain protein (colored cyan).


Structures of the dual bromodomains of the P-TEFb-activating protein Brd4 at atomic resolution.
Vollmuth F, Blankenfeldt W, Geyer M.
J Biol Chem. 2009 Dec 25;284(52):36547-56.

(PubMed)

3jvk (PDB)

The bromodomain interaction module.
Filippakopoulos P, Knapp S.
FEBS Lett. 2012 Aug 14;586(17):2692-704. doi: 10.1016/j.febslet.2012.04.045. Epub 2012 May 3. Review.

Abstract
ε-N-acetylation of lysine residues (K(ac)) is one of the most abundant post-translation modifications (PTMs) in the human proteome. In the nucleus, acetylation of histones has been linked to transcriptional activation of genes but the functional consequences of most acetylation events and proteins recruited to these sites remains largely unknown. Bromodomains (BRDs) are small helical interaction modules that specifically recognize acetylation sites in proteins. BRDs have recently emerged as interesting targets for the development of specific protein interaction inhibitors, enabling a novel exiting strategy for the development of new therapies. This review provides an overview over sequence requirements of BRDs, known substrates and the structural mechanisms of specific K(ac) recognition.

Bromodomain: an acetyl-lysine binding domain.
Zeng L, Zhou MM.
FEBS Lett. 2002 Feb 20;513(1):124-8. Review.

Abstract
Bromodomains, an extensive family of evolutionarily conserved protein modules originally found in proteins associated with chromatin and in nearly all nuclear histone acetyltransferases, have been recently discovered to function as acetyl-lysine binding domains. More recent structural studies of bromodomain/peptide ligand complexes have enriched our understanding of differences in ligand selectivity of bromodomains. These new findings demonstrate that bromodomain/acetyl-lysine recognition can serve as a pivotal mechanism for regulating protein-protein interactions in numerous cellular processes including chromatin remodeling and transcriptional activation, and reinforce the concept that functional diversity of a conserved protein modular structure is achieved by evolutionary changes of amino acid sequences in the ligand binding site.